VertexDataServer
class NffReader extends PolygonFileReader
Modifier and Type | Field | Description |
---|---|---|
protected int |
nPolygons |
|
private javajs.util.P3 |
pt |
|
private java.util.Map<java.lang.String,java.lang.Integer> |
vertexMap |
nTriangles, nVertices
allowSigma, ANGSTROMS_PER_BOHR, anisotropy, center, cJvxlEdgeNaN, colorFractionBase, colorFractionRange, contourVertexCount, dataMax, dataMean, dataMin, defaultCutoff, defaultMappedDataMax, defaultMappedDataMin, eccentricityMatrix, eccentricityMatrixInverse, eccentricityRatio, eccentricityScale, edgeFractionBase, edgeFractionRange, fractionData, hasColorData, haveSurfaceAtoms, isAnisotropic, isEccentric, isJvxl, isPeriodic, isProgressive, isQuiet, isXLowToHigh, jvxlColorDataRead, jvxlCutoff, jvxlData, jvxlDataIs2dContour, jvxlDataIsColorDensity, jvxlDataIsColorMapped, jvxlDataIsPrecisionColor, jvxlEdgeDataRead, jvxlFileHeaderBuffer, jvxlNSurfaceInts, jvxlVoxelBitSet, marchingCubes, marchingSquares, meshData, meshDataServer, minMax, nBytes, nDataPoints, nPointsX, nPointsY, nPointsZ, params, ptTemp, qpc, sg, vertexDataOnly, volumeData, volumetricOrigin, volumetricVectors, voxelCounts, voxelData, xyzMax, xyzMin, yzCount, yzPlanes
Constructor | Description |
---|---|
NffReader() |
Modifier and Type | Method | Description |
---|---|---|
(package private) void |
getSurfaceData() |
|
private int |
getVertex() |
|
(package private) void |
init2(SurfaceGenerator sg,
java.io.BufferedReader br) |
|
protected boolean |
readVerticesAndPolygons() |
|
protected void |
setHeader() |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
init2PFR, readSurfaceData, readVolumeData, readVolumeParameters
closeReader, closeReaderSFR, discardTempData, getQuotedStringNext, getTokens, init, init2SFR, newBinaryDocument, parseFloat, parseFloatArray, parseFloatArrayStr, parseFloatRange, parseFloatStr, parseInt, parseIntNext, parseIntStr, rd, setOutputChannel, setStream, skipTo
addTriangleCheck, addVC, addVertexCopy, applyColorScale, colorIsosurface, createIsosurface, discardTempDataSR, excludeMaximumSet, excludeMinimumSet, finalizeMapping, getColorPhaseIndex, getMinMaxMappedValues, getPlane, getPlaneSR, getSPF, getSurfaceAtomIndex, getSurfacePointAndFraction, getSurfacePointIndexAndFraction, getValue, getValue2, getValueAtPoint, gotoAndReadVoxelData, gotoData, initializeMapping, initializeVolumetricData, initPlanes, initSR, jvxlUpdateInfo, newVoxelDataCube, postProcessVertices, readAndSetVolumeParameters, readColorData, resetIsosurface, selectPocket, setBBox, setVectorAnisotropy, setVertexAnisotropy, setVolumeDataV, setVolumetricAnisotropy, setVolumetricOriginAnisotropy, slabIsosurface, updateSurfaceData, updateTriangles
protected int nPolygons
private final java.util.Map<java.lang.String,java.lang.Integer> vertexMap
private final javajs.util.P3 pt
void init2(SurfaceGenerator sg, java.io.BufferedReader br)
init2
in class SurfaceFileReader
protected void setHeader()
void getSurfaceData() throws java.lang.Exception
getSurfaceData
in class PolygonFileReader
java.lang.Exception
protected boolean readVerticesAndPolygons()
private int getVertex() throws java.lang.Exception
java.lang.Exception